Here are some ideas for father/daughter pairs:
Yang and Ursula from Final Fantasy IV: The After Years
Shadow and Relm from Final Fantasy VI
Tuxedo Mask and Chibi Moon from Sailor Moon
Sultan and Jasmine from Disney's Aladdin
Kiritsugu and Illyasviel from the Fate universe
Lots of father/daughter options in the Dynasty Warriors and Fire Emblem series, too.
Hope these ideas helped the brainstorming!